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author:

Xue, Chang (Xue, Chang.) [1] | Xiao, Shuai (Xiao, Shuai.) [2] | Ouyang, Chang-He (Ouyang, Chang-He.) [3] | Li, Cong-Cong (Li, Cong-Cong.) [4] | Gao, Zhi-Hua (Gao, Zhi-Hua.) [5] | Shen, Zhi-Fa (Shen, Zhi-Fa.) [6] | Wu, Zai-Sheng (Wu, Zai-Sheng.) [7] (Scholars:吴再生)

Indexed by:

EI Scopus SCIE

Abstract:

Mutation of p53 tumor suppressor gene represents one of the early molecular events in tumor initiation and progression. Although molecular computing holds tremendous potential with important applications in diagnosis, prognosis and treatment of human diseases at the molecular level, designing molecular logic gates to implement cascade amplification via operating autonomously for the detection of point mutations still remains challenging. In this contribution, we developed a three concatenated logic gates (TCLG) to perform multiple strand displacement amplification (m-SDA) for screening the cancer-related point mutations only via designing an innovative molecular beacon (MB). Specifically, using p53 gene as model target, extending the two ends of a MB via adding two fragments with the same sequence achieves two unique terminal single-stranded (ss) overhangs. After self-folding of MB into hairpin structure, the two overhangs exhibit a near inverted mirror image (IM) relationship if taking the base nature and direction into account. For this, the probe is called IM-MB. Because cascade SDAs can occur on IM-MB and promote each other, the target gene can be detected down to 10 pM. Along this line, the TCLG circuit was proposed, and two primers and target gene serve as the indispensable input signals. Utilizing this logic circuit, the point mutation or absence of target gene can be sensitively screened. Moreover, its potential application in the recognition of point mutations in complex biomatrix has been demonstrated via blind test. The proof-of-concept scheme is expected to provide new insight into the development of DNA-based molecular logic gates and their applications in basic research, medical diagnosis and precise treatment and treatment of genetic diseases. (C) 2018 Elsevier B.V. All rights reserved.

Keyword:

DNA Logic gates Multiple strand displacement amplification p53 tumor suppressor gene

Community:

  • [ 1 ] [Xue, Chang]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 2 ] [Xiao, Shuai]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 3 ] [Ouyang, Chang-He]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 4 ] [Li, Cong-Cong]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 5 ] [Gao, Zhi-Hua]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 6 ] [Shen, Zhi-Fa]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 7 ] [Wu, Zai-Sheng]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China
  • [ 8 ] [Xiao, Shuai]Wenzhou Med Univ, Key Lab Lab Med, Minist Educ China,Inst Funct Nucle Acids & Person, Zhejiang Prov Key Lab Med Genet,Sch Lab Med & Lif, Wenzhou 325035, Peoples R China
  • [ 9 ] [Gao, Zhi-Hua]Wenzhou Med Univ, Key Lab Lab Med, Minist Educ China,Inst Funct Nucle Acids & Person, Zhejiang Prov Key Lab Med Genet,Sch Lab Med & Lif, Wenzhou 325035, Peoples R China
  • [ 10 ] [Shen, Zhi-Fa]Wenzhou Med Univ, Key Lab Lab Med, Minist Educ China,Inst Funct Nucle Acids & Person, Zhejiang Prov Key Lab Med Genet,Sch Lab Med & Lif, Wenzhou 325035, Peoples R China

Reprint 's Address:

  • 吴再生

    [Wu, Zai-Sheng]Fuzhou Univ, Canc Metastasis Alert & Prevent Ctr, Pharmaceut Photocatalysis State Key Lab Photocata, Coll Chem,Fujian Prov Key Lab Canc Metastasis Che, Fuzhou 350002, Fujian, Peoples R China

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Source :

ANALYTICA CHIMICA ACTA

ISSN: 0003-2670

Year: 2019

Volume: 1051

Page: 179-186

5 . 9 7 7

JCR@2019

5 . 7 0 0

JCR@2023

ESI Discipline: CHEMISTRY;

ESI HC Threshold:184

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count: 11

SCOPUS Cited Count: 11

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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