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author:

Chang, Weng-Long (Chang, Weng-Long.) [1] | Chen, Ju-Chin (Chen, Ju-Chin.) [2] | Chung, Wen-Yu (Chung, Wen-Yu.) [3] | Hsiao, Chun-Yuan (Hsiao, Chun-Yuan.) [4] | Wong, Renata (Wong, Renata.) [5] | Vasilakos, Athanasios V. (Vasilakos, Athanasios V..) [6]

Indexed by:

EI SCIE

Abstract:

In this paper, we propose a bio-molecular algorithm with O(n(2) + m) biological operations, O(2(n)) DNA strands, O(n) tubes and the longest DNA strand, O(n), for solving the independent-set problem for any graph G with m edges and n vertices. Next, we show that a new kind of the straightforward Boolean circuit yielded from the bio-molecular solutions with m NAND gates, (m+n x(n + 1)) AND gates and ((n x (n + 1))/2) NOT gates can find the maximal independent-set(s)to the independent-set problem for any graph G with m edges and n vertices. We show that a new kind of the proposed quantum-molecular algorithm can find the maximal independent set(s) with the lower bound Omega(2(n/2)) queries and the upper bound O(2(n/2)) queries. This work offers an obvious evidence for that to solve the independent-set problem in any graph G with m edges and n vertices, bio-molecular computers are able to generate a new kind of the straightforward Boolean circuit such that by means of implementing it quantum computers can give a quadratic speed-up. This work also offers one obvious evidence that quantum computers can significantly accelerate the speed and enhance the scalability of bio-molecular computers. Next, the element distinctness problem with input of n bits is to determine whether the given 2(n) real numbers are distinct or not. The quantum lower bound of solving the element distinctness problem is Omega(2(nx(2/3))) queries in the case of a quantum walk algorithm. We further show that the proposed quantum-molecular algorithm reduces the quantum lower bound to Omega((2(n/2))/(2(1/2))) queries. Furthermore, to justify the feasibility of the proposed quantum-molecular algorithm, we successfully solve a typical independent set problem for a graph G with two vertices and one edge by carrying out experiments on the backend ibmqx4 with five quantum bits and the backend simulator with 32 quantum bits on IBM's quantum computer.

Keyword:

Computers Computer science Data structures and algorithms DNA Electron tubes independent-set problem molecular algorithms molecular computing quantum algorithms quantum computing Quantum computing Roads Urban areas

Community:

  • [ 1 ] [Chang, Weng-Long]Natl Kaohsiung Univ Sci & Technol, Dept Comp Sci & Informat Engn, Kaohsiung 80778, Taiwan
  • [ 2 ] [Chen, Ju-Chin]Natl Kaohsiung Univ Sci & Technol, Dept Comp Sci & Informat Engn, Kaohsiung 80778, Taiwan
  • [ 3 ] [Chung, Wen-Yu]Natl Kaohsiung Univ Sci & Technol, Dept Comp Sci & Informat Engn, Kaohsiung 80778, Taiwan
  • [ 4 ] [Hsiao, Chun-Yuan]Natl Kaohsiung Univ Sci & Technol, Dept Comp Sci & Informat Engn, Kaohsiung 80778, Taiwan
  • [ 5 ] [Wong, Renata]Nanjing Univ, Dept Comp Sci & Technol, Nanjing 210023, Peoples R China
  • [ 6 ] [Vasilakos, Athanasios V.]Univ Technol Sydney, Sch Elect & Data Engn, Ultimo, NSW 2007, Australia
  • [ 7 ] [Vasilakos, Athanasios V.]Fuzhou Univ, Coll Math & Comp Sci, Fuzhou 350116, Peoples R China
  • [ 8 ] [Vasilakos, Athanasios V.]Lulea Univ Technol, Dept Comp Sci Elect & Space Engn, S-97187 Lulea, Sweden

Reprint 's Address:

  • [Chang, Weng-Long]Natl Kaohsiung Univ Sci & Technol, Dept Comp Sci & Informat Engn, Kaohsiung 80778, Taiwan

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Source :

IEEE TRANSACTIONS ON NANOBIOSCIENCE

ISSN: 1536-1241

Year: 2021

Issue: 3

Volume: 20

Page: 354-376

3 . 2 0 6

JCR@2021

3 . 7 0 0

JCR@2023

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

ESI HC Threshold:104

JCR Journal Grade:3

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 22

SCOPUS Cited Count: 24

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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