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author:

Chen, Wei (Chen, Wei.) [1] | Yu, Yushuai (Yu, Yushuai.) [2] | Wang, Chenxi (Wang, Chenxi.) [3] | Jiang, Zirong (Jiang, Zirong.) [4] | Huang, Xiewei (Huang, Xiewei.) [5] | Lin, Yidan (Lin, Yidan.) [6] | Han, Hongjing (Han, Hongjing.) [7] | Wang, Qing (Wang, Qing.) [8] | Zhang, Hui (Zhang, Hui.) [9]

Indexed by:

SCIE

Abstract:

BackgroundBromodomain-containing protein (BRD) play a pivotal role in the development and progression of malignant tumours. This study aims to identify prognostic genes linked to BRD-related genes (BRDRGs) in patients with triple-negative breast cancer (TNBC) and to construct a novel prognostic model.MethodsData from TCGA-TNBC, GSE135565, and GSE161529 were retrieved from public databases. GSE161529 was used to identify key cell types. The BRDRGs score in TCGA-TNBC was calculated using single-sample Gene Set Enrichment Analysis (ssGSEA). Differential expression analysis was performed to identify differentially expressed genes (DEGs): DEGs1 in key cells, DEGs2 between tumours and controls and DEGs3 in high and low BRDRGs score subgroups in TCGA-TNBC. Differentially expressed BRDRGs (DE-BRDRGs) were determined by overlapping DEGs1, DEGs2 and DEGs3. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and protein-protein interaction (PPI) network analysis were conducted to investigate active pathways and molecular interactions. Prognostic genes were selected through univariate Cox regression and least absolute shrinkage and selection operator (LASSO) regression analyses to construct a risk model and calculate risk scores. TNBC samples from TCGA-TNBC were classified into high and low-risk groups based on the median risk score. Additionally, correlations with clinical characteristics, Gene Set Enrichment Analysis (GSEA), immune analysis, and pseudotime analysis were performed.ResultsA total of 120 DE-BRDRGs were identified by overlapping 605 DEGs1 from four key cell types, 10,776 DEGs2, and 4,497 DEGs3. GO analysis revealed enriched terms such as 'apoptotic process,' 'immune response,' and 'regulation of the cell cycle,' while 56 KEGG pathways, including the 'MAPK signaling pathway,' were associated with DE-BRDRGs. A risk model comprising six prognostic genes (KRT6A, PGF, ABCA1, EDNRB, CTSD and GJA4) was constructed. A nomogram based on independent prognostic factors was also developed. Immune cell abundance was significantly higher in high-risk group. In both risk groups, TP53 exhibited the highest mutation frequency. The expression of KRT6A, ABCA1, EDNRB, and CTSD went decreased progressively in pseudotime.ConclusionA novel prognostic model for TNBC associated with BRDRGs was developed and validated, providing fresh insights into the relationship between BRD and TNBC.

Keyword:

Bromodomain-containing protein Immune microenvironment Prognosis Triple-negative breast cancer

Community:

  • [ 1 ] [Chen, Wei]Fuzhou Univ, Fuiian Med Univ, Fujian Prov Hosp, Dept Breast Surg,Shengli Clin Med Coll,Affiliated, Fuzhou 350001, Peoples R China
  • [ 2 ] [Zhang, Hui]Fuzhou Univ, Fuiian Med Univ, Fujian Prov Hosp, Dept Breast Surg,Shengli Clin Med Coll,Affiliated, Fuzhou 350001, Peoples R China
  • [ 3 ] [Yu, Yushuai]Fujian Med Univ, Fuzhou 350000, Peoples R China
  • [ 4 ] [Huang, Xiewei]Fujian Med Univ, Fuzhou 350000, Peoples R China
  • [ 5 ] [Lin, Yidan]Fujian Med Univ, Fuzhou 350000, Peoples R China
  • [ 6 ] [Wang, Qing]Fujian Med Univ, Fuzhou 350000, Peoples R China
  • [ 7 ] [Han, Hongjing]Second Peoples Hosp Jingdezhen, Gen Surg Dept, Sect 2, Jingdezhen 333000, Peoples R China
  • [ 8 ] [Wang, Chenxi]Kunming Med Univ, Dept Breast Surg 3, Affiliated Hosp 3, Kunming 650118, Yunnan, Peoples R China
  • [ 9 ] [Wang, Chenxi]Yunnan Canc Hosp, Kunming 650118, Yunnan, Peoples R China
  • [ 10 ] [Jiang, Zirong]Ningde Normal Univ, Ningde Municipal Hosp, Dept Breast & Thyroid Surg, Ningde Clin Med Coll,Fujian Med Univ, Ningde 352100, Fujian Province, Peoples R China
  • [ 11 ] [Zhang, Hui]134 Dongjie St, Fuzhou 350001, Fujian, Peoples R China

Reprint 's Address:

  • [Zhang, Hui]Fuzhou Univ, Fuiian Med Univ, Fujian Prov Hosp, Dept Breast Surg,Shengli Clin Med Coll,Affiliated, Fuzhou 350001, Peoples R China;;[Wang, Qing]Fujian Med Univ, Fuzhou 350000, Peoples R China;;[Han, Hongjing]Second Peoples Hosp Jingdezhen, Gen Surg Dept, Sect 2, Jingdezhen 333000, Peoples R China;;[Zhang, Hui]134 Dongjie St, Fuzhou 350001, Fujian, Peoples R China;;

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Source :

CANCER CELL INTERNATIONAL

Year: 2025

Issue: 1

Volume: 25

5 . 3 0 0

JCR@2023

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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