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author:

Fu, Lei (Fu, Lei.) [1] | Weng, Zuquan (Weng, Zuquan.) [2] (Scholars:翁祖铨) | Zhang, Jiheng (Zhang, Jiheng.) [3] | Xie, Haihe (Xie, Haihe.) [4] | Cao, Yiqing (Cao, Yiqing.) [5]

Indexed by:

EI Scopus SCIE

Abstract:

Named entity recognition (NER) is an important task in natural language processing (NLP). In recent years, NER has attracted much attention in the biomedical field. However, due to the lack of biomedical named entity identification datasets, the complexity and rarity of biomedical named entities and so on, biomedical NER is more difficult than general domain NER. So in this paper, we propose a framework (MMBERT) based on Transformer to solve the problems above. To address the scarcity of biomedical named entity recognition datasets, we introduce ERNIE-Health, a new Chinese language representation model pre-trained on large-scale biomedical text corpora. Because of the complexity and rarity of biomedical named entities, we use the Bert and CW-LSTM structures to get the joint feature vector of word pairs relations. In addition, we design multi-granularity 2D convolution to refine the relationship and representation between word pairs. Finally, we design a convolutional neural network (CNN) structure and a co-predictor to improve the model's generalization capability and prediction accuracy. We have conducted extensive experiments on three benchmark datasets, and the experimental results show that our model achieves the best results compared with several baseline models in the experiment.

Keyword:

Convolutional neural network Named entity recognition Natural language processing Transformer

Community:

  • [ 1 ] [Fu, Lei]PuTian Univ, Coll Electromech & Informat Engn, Putian 351100, Fujian, Peoples R China
  • [ 2 ] [Xie, Haihe]PuTian Univ, Coll Electromech & Informat Engn, Putian 351100, Fujian, Peoples R China
  • [ 3 ] [Cao, Yiqing]PuTian Univ, Coll Electromech & Informat Engn, Putian 351100, Fujian, Peoples R China
  • [ 4 ] [Weng, Zuquan]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350000, Fujian, Peoples R China
  • [ 5 ] [Zhang, Jiheng]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350000, Fujian, Peoples R China
  • [ 6 ] [Weng, Zuquan]Fuzhou Univ, Coll Math & Comp Sci, Ctr Big Data Res Burns & Trauma, Fuzhou 350000, Fujian, Peoples R China
  • [ 7 ] [Zhang, Jiheng]Fuzhou Univ, Coll Math & Comp Sci, Ctr Big Data Res Burns & Trauma, Fuzhou 350000, Fujian, Peoples R China

Reprint 's Address:

  • [Weng, Zuquan]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350000, Fujian, Peoples R China;;[Weng, Zuquan]Fuzhou Univ, Coll Math & Comp Sci, Ctr Big Data Res Burns & Trauma, Fuzhou 350000, Fujian, Peoples R China;;

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Source :

MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING

ISSN: 0140-0118

Year: 2023

Issue: 1

Volume: 62

Page: 327-341

2 . 6

JCR@2023

2 . 6 0 0

JCR@2023

JCR Journal Grade:2

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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