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author:

Zhang, Xiaolong (Zhang, Xiaolong.) [1] | Zheng, Cheng (Zheng, Cheng.) [2] (Scholars:郑琤) | Ding, Lei (Ding, Lei.) [3] | Wu, Yanni (Wu, Yanni.) [4] | Xu, Haipo (Xu, Haipo.) [5] | Sun, Yupeng (Sun, Yupeng.) [6] | Zeng, Yongyi (Zeng, Yongyi.) [7] | Liu, Xiaolong (Liu, Xiaolong.) [8] | Liu, Jingfeng (Liu, Jingfeng.) [9]

Indexed by:

EI SCIE

Abstract:

Polynucleotide kinase (PNK) is an important DNA damage repair-related enzyme and also a promising therapeutic target in various diseases. Here, we developed a dual amplified sensing strategy based on the combination of terminal deoxynucleotidyl transferase (TdT) and CRISPR-Cas12a for high selective and sensitive detection of PNK activity in cell lysates and also inhibitor screening. In this sensing system, the PNK converted the 3'-phosphate DNA to 3'-hydroxy DNA, and then the TdT catalyzed to add a long poly-adenine (poly (A)) at the 3' OH terminus DNA (as first amplified step). The produced poly (A) tail acted as activator to trigger the Cas12a trans-cleavage (non-target) activity to cleave reporter probes for fluorescence detection (as second amplified step). The dual amplified steps lead to a synergetic signal amplification effect for sensitive detection of PNK activity. The developed sensing platform enable detect PNK activity with linear range from 0 to 1 U/mL and a direct detection limit of 5 x 10(-4) U/mL. It was also successfully used for PNK inhibitor screening and PNK activity detection in cell extracts even at a single-cell level. The efficient dual amplified method can broaden the CRISPR/Cas-based sensing systems in other bio-/chem-analysis fields.

Keyword:

CRISPR-Cas12a Dephosphorylation DNA damage repair Polynucleotide kinase Terminal deoxynucleotidyl transferase

Community:

  • [ 1 ] [Zhang, Xiaolong]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 2 ] [Ding, Lei]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 3 ] [Wu, Yanni]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 4 ] [Xu, Haipo]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 5 ] [Sun, Yupeng]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 6 ] [Zeng, Yongyi]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 7 ] [Liu, Xiaolong]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 8 ] [Liu, Jingfeng]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China
  • [ 9 ] [Zhang, Xiaolong]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 10 ] [Ding, Lei]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 11 ] [Wu, Yanni]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 12 ] [Xu, Haipo]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 13 ] [Sun, Yupeng]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 14 ] [Zeng, Yongyi]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 15 ] [Liu, Xiaolong]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 16 ] [Liu, Jingfeng]Fuzhou Univ, Mengchao MedX Ctr, Fuzhou 350116, Peoples R China
  • [ 17 ] [Zheng, Cheng]Fuzhou Univ, Coll Chem, Fuzhou 350116, Peoples R China
  • [ 18 ] [Ding, Lei]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350116, Peoples R China
  • [ 19 ] [Wu, Yanni]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350116, Peoples R China
  • [ 20 ] [Zeng, Yongyi]Fujian Med Univ, Liver Dis Ctr, Affiliated Hosp 1, Fuzhou 350005, Peoples R China
  • [ 21 ] [Liu, Xiaolong]Fujian Med Univ, Liver Dis Ctr, Affiliated Hosp 1, Fuzhou 350005, Peoples R China
  • [ 22 ] [Liu, Jingfeng]Fujian Med Univ, Liver Dis Ctr, Affiliated Hosp 1, Fuzhou 350005, Peoples R China
  • [ 23 ] [Liu, Jingfeng]Fujian Med Univ, Canc Hosp, Fuzhou 350014, Peoples R China

Reprint 's Address:

  • 刘小龙 刘景丰

    [Liu, Xiaolong]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China;;[Liu, Jingfeng]Fujian Med Univ, United Innovat Mengchao Hepatobiliary Technol Key, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China

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Source :

SENSORS AND ACTUATORS B-CHEMICAL

ISSN: 0925-4005

Year: 2021

Volume: 330

9 . 2 2 1

JCR@2021

8 . 0 0 0

JCR@2023

ESI Discipline: CHEMISTRY;

ESI HC Threshold:117

JCR Journal Grade:1

CAS Journal Grade:1

Cited Count:

WoS CC Cited Count: 24

SCOPUS Cited Count: 24

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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