Based　on　the　panel　data　of　the　first,　second　and　fourth　batch　of　innovative　pilot　small,　and　medium-sized　enterprise　in　Fujian　province,　we　assess　the　human　resources　performance　efficiency　in　innovative　enterprise　by　using　TOPSIS　efficiency　measure　model　and　the　non-radial　super　efficiency　DEA　model.　Finally,　we　use　the　combination　efficiency　data　to　analyze　the　performance.　The　result　shows　that,　in　order　to　improve　the　human　resources　performance,　enterprise　should　pay　more　attention　to　the　staff　education,　and　improve　enterprise＇s　talent　mechanism　from　the　enterprise　culture,　enterprise　strategy.