• Complex
  • Title
  • Keyword
  • Abstract
  • Scholars
  • Journal
  • ISSN
  • Conference
成果搜索

author:

Peng, Xing (Peng, Xing.) [1] | Dang, Yuan (Dang, Yuan.) [2] | Huang, Jingyun (Huang, Jingyun.) [3] | Luo, Shangyi (Luo, Shangyi.) [4] | Xiong, Zhuang (Xiong, Zhuang.) [5]

Indexed by:

CPCI-S

Abstract:

Many traditional drug prediction models mostly focus on analyzing single omics data, while ignoring the rich multi-omics data in bioinformatics. Moreover, they failed to make full use of the drug complementary information of sequence features and graphical features when considering the SMILES(Simplified molecular input line entry system) features. In view of this, we propose a deep learning model GSDRP that effectively integrates omics data and drug attribute information. SA-BiLSTM is used to extract one-dimensional sequence features of drugs, and Graph Transformer and GAT_GCN capture two-dimensional structural features, which are then fused by the graph sequence attention module. At the same time, the omics data features are processed by convolutional neural network. Finally, the cross-attention module in GSDRP facilitates the fusion of omics and drug features to enhance interactions for better prediction. Experiments on the Cancer Drug Sensitivity Database (GDSC) show that GSDRP can effectively combine multi-omics information such as genome aberration (MUT_CNA) and gene expression (GE) with the 1-D and 2-D features of SMILES to significantly improve the accuracy of drug response prediction. The comparison results with four other state-of-the-art methods further demonstrate the superior performance of GSDRP in drug response prediction. In addtion,we identify important omics markers and important characteristics of drugs that affect HCC celllines response prediction. This will not only help to understand the therapeutic mechanism of hepatocellular carcinoma, but also provide strong support for future individualized treatment.

Keyword:

Deep Learning Drug Response Prediction Graph Sequence Fusion Multi-omics

Community:

  • [ 1 ] [Peng, Xing]Fuzhou Univ, Coll Comp & Data Sci, Fuzhou 350108, Fujian, Peoples R China
  • [ 2 ] [Dang, Yuan]Fuzhou Univ, Coll Comp & Data Sci, Fuzhou 350108, Fujian, Peoples R China
  • [ 3 ] [Peng, Xing]Fujian Med Univ, Innovat Ctr Canc Res, Clin Oncol Sch, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China
  • [ 4 ] [Dang, Yuan]Fujian Med Univ, Innovat Ctr Canc Res, Clin Oncol Sch, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China
  • [ 5 ] [Huang, Jingyun]Fujian Med Univ, Innovat Ctr Canc Res, Clin Oncol Sch, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China
  • [ 6 ] [Peng, Xing]Fuzhou Univ, Interdisciplinary Inst Med Engn, Fuzhou 350108, Fujian, Peoples R China
  • [ 7 ] [Dang, Yuan]Fuzhou Univ, Interdisciplinary Inst Med Engn, Fuzhou 350108, Fujian, Peoples R China
  • [ 8 ] [Luo, Shangyi]Fuzhou Univ, Interdisciplinary Inst Med Engn, Fuzhou 350108, Fujian, Peoples R China
  • [ 9 ] [Xiong, Zhuang]Fuzhou Univ, Interdisciplinary Inst Med Engn, Fuzhou 350108, Fujian, Peoples R China
  • [ 10 ] [Peng, Xing]Fujian Med Univ, Clin Oncol Sch, Fujian Key Lab Adv Technol Canc Screening & Early, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China
  • [ 11 ] [Dang, Yuan]Fujian Med Univ, Clin Oncol Sch, Fujian Key Lab Adv Technol Canc Screening & Early, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China
  • [ 12 ] [Huang, Jingyun]Fujian Med Univ, Clin Oncol Sch, Fujian Key Lab Adv Technol Canc Screening & Early, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China

Reprint 's Address:

  • [Dang, Yuan]Fuzhou Univ, Coll Comp & Data Sci, Fuzhou 350108, Fujian, Peoples R China;;[Dang, Yuan]Fujian Med Univ, Innovat Ctr Canc Res, Clin Oncol Sch, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China;;[Dang, Yuan]Fuzhou Univ, Interdisciplinary Inst Med Engn, Fuzhou 350108, Fujian, Peoples R China;;[Dang, Yuan]Fujian Med Univ, Clin Oncol Sch, Fujian Key Lab Adv Technol Canc Screening & Early, Fujian Canc Hosp, Fuzhou 350014, Fujian, Peoples R China;;

Show more details

Related Keywords:

Source :

BIOINFORMATICS RESEARCH AND APPLICATIONS, PT I, ISBRA 2024

ISSN: 2366-6323

Year: 2024

Volume: 14954

Page: 151-168

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 3

Online/Total:119/9526049
Address:FZU Library(No.2 Xuyuan Road, Fuzhou, Fujian, PRC Post Code:350116) Contact Us:0591-22865326
Copyright:FZU Library Technical Support:Beijing Aegean Software Co., Ltd. 闽ICP备05005463号-1