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author:

Tao, Xiaoqi (Tao, Xiaoqi.) [1] | He, Fan (He, Fan.) [2] | Liu, Xixia (Liu, Xixia.) [3] | Zhang, Fang (Zhang, Fang.) [4] (Scholars:张芳) | Wang, Xin (Wang, Xin.) [5] | Peng, Yuanyuan (Peng, Yuanyuan.) [6] | Liu, Juewen (Liu, Juewen.) [7]

Indexed by:

SCIE

Abstract:

A chloramphenicol (CAP)-binding aptamer of 80 nucleotides (nt) was reported in 2011. In 2014, it was truncated to 40 nt and has since been used by most researchers, although a careful binding study is still lacking. In this work, binding assays using isothermal titration calorimetry and various DNA-staining dyes were performed. By comparing the truncated aptamer with three control sequences, no specific binding of CAP was observed in each case. The secondary structures of the original and truncated aptamers were analyzed, and it was shown that the likelihood of the truncated aptamer to retain the same binding mechanism as the original sequence is low. We further examined gold nanoparticle (AuNP)-based label-free colorimetric assays. By quantifying the extinction ratio at 620 nm over that at 520 nm, a similar color response was observed regardless of the sequence of DNA, suggesting the color change mainly reflected other events such as the adsorption of CAP by the AuNPs, instead of aptamer binding to CAP. Salt-induced aggregation experiments suggested direct adsorption of CAP on AuNPs. CAP only weakly inhibited DNA adsorption by AuNPs but did not displace pre-adsorbed DNA. Therefore, CAP adsorption by AuNPs needs to be considered when designing related sensors, for example, by using non-aptamer sequences as controls. This work calls for careful confirmation of aptamer binding and control experiments for designing aptamer and AuNP-based biosensors.

Keyword:

Antibiotics Aptamers Biosensors Colorimetric assay Gold nanoparticles Label-free detection

Community:

  • [ 1 ] [Tao, Xiaoqi]Southwest Univ, Coll Food Sci, Chongqing 400715, Peoples R China
  • [ 2 ] [Wang, Xin]Southwest Univ, Coll Food Sci, Chongqing 400715, Peoples R China
  • [ 3 ] [Peng, Yuanyuan]Southwest Univ, Coll Food Sci, Chongqing 400715, Peoples R China
  • [ 4 ] [Tao, Xiaoqi]Univ Waterloo, Waterloo Inst Nanotechnol, Dept Chem, Waterloo, ON N2L 3G1, Canada
  • [ 5 ] [He, Fan]Univ Waterloo, Waterloo Inst Nanotechnol, Dept Chem, Waterloo, ON N2L 3G1, Canada
  • [ 6 ] [Liu, Xixia]Univ Waterloo, Waterloo Inst Nanotechnol, Dept Chem, Waterloo, ON N2L 3G1, Canada
  • [ 7 ] [Zhang, Fang]Univ Waterloo, Waterloo Inst Nanotechnol, Dept Chem, Waterloo, ON N2L 3G1, Canada
  • [ 8 ] [Liu, Juewen]Univ Waterloo, Waterloo Inst Nanotechnol, Dept Chem, Waterloo, ON N2L 3G1, Canada
  • [ 9 ] [He, Fan]South China Agr Univ, Coll Food Sci, Guangdong Prov Key Lab Food Qual & Safety, Guangzhou 510642, Peoples R China
  • [ 10 ] [Liu, Xixia]Hubei Normal Univ, Hubei Key Lab Edible Wild Plants Conservat & Util, Huangshi 425002, Hubei, Peoples R China
  • [ 11 ] [Zhang, Fang]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou 350108, Peoples R China

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Source :

MICROCHIMICA ACTA

ISSN: 0026-3672

Year: 2020

Issue: 12

Volume: 187

5 . 8 3 3

JCR@2020

5 . 4 0 0

JCR@2023

ESI Discipline: CHEMISTRY;

ESI HC Threshold:160

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count: 33

SCOPUS Cited Count: 36

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 5

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