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author:

Wang, Zidong (Wang, Zidong.) [1] | Zineddin, Bachar (Zineddin, Bachar.) [2] | Liang, Jinling (Liang, Jinling.) [3] | Zeng, Nianyin (Zeng, Nianyin.) [4] | Li, Yurong (Li, Yurong.) [5] | Du, Min (Du, Min.) [6] | Cao, Jie (Cao, Jie.) [7] | Liu, Xiaohui (Liu, Xiaohui.) [8]

Indexed by:

EI

Abstract:

Microarray technology has become a great source of information for biologists to understand the workings of DNA which is one of the most complex codes in nature. Microarray images typically contain several thousands of small spots, each of which represents a different gene in the experiment. One of the key steps in extracting information from a microarray image is the segmentation whose aim is to identify which pixels within an image represent which gene. This task is greatly complicated by noise within the image and a wide degree of variation in the values of the pixels belonging to a typical spot. In the past there have been many methods proposed for the segmentation of microarray image. In this paper, a new method utilizing a series of artificial neural networks, which are based on multi-layer perceptron (MLP) and Kohonen networks, is proposed. The proposed method is applied to a set of real-world cDNA images. Quantitative comparisons between the proposed method and commercial software GenePix® are carried out in terms of the peak signal-to-noise ratio (PSNR). This method is shown to not only deliver results comparable and even superior to existing techniques but also have a faster run time. © 2013 Elsevier Ireland Ltd.

Keyword:

Gene encoding Image segmentation Multilayer neural networks Neural networks Pixels Signal to noise ratio

Community:

  • [ 1 ] [Wang, Zidong]Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex UB8 3PH, United Kingdom
  • [ 2 ] [Zineddin, Bachar]Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex UB8 3PH, United Kingdom
  • [ 3 ] [Liang, Jinling]Department of Mathematics, Southeast University, Nanjing 210096, China
  • [ 4 ] [Zeng, Nianyin]College of Electrical Engineering and Automation, Fuzhou University, Fuzhou 350002, China
  • [ 5 ] [Li, Yurong]College of Electrical Engineering and Automation, Fuzhou University, Fuzhou 350002, China
  • [ 6 ] [Du, Min]College of Electrical Engineering and Automation, Fuzhou University, Fuzhou 350002, China
  • [ 7 ] [Cao, Jie]School of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing 210094, China
  • [ 8 ] [Liu, Xiaohui]Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex UB8 3PH, United Kingdom

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Source :

Computer Methods and Programs in Biomedicine

ISSN: 0169-2607

Year: 2013

Issue: 1

Volume: 111

Page: 189-198

1 . 0 9 3

JCR@2013

4 . 9 0 0

JCR@2023

JCR Journal Grade:2

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count: 24

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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