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[期刊论文]

A novel neural network approach to cDNA microarray image segmentation

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author:

Wang, Zidong (Wang, Zidong.) [1] | Zineddin, Bachar (Zineddin, Bachar.) [2] | Liang, Jinling (Liang, Jinling.) [3] | Unfold

Indexed by:

EI Scopus SCIE

Abstract:

Microarray technology has become a great source of information for biologists to understand the workings of DNA which is one of the most complex codes in nature. Microarray images typically contain several thousands of small spots, each of which represents a different gene in the experiment. One of the key steps in extracting information from a microarray image is the segmentation whose aim is to identify which pixels within an image represent which gene. This task is greatly complicated by noise within the image and a wide degree of variation in the values of the pixels belonging to a typical spot. In the past there have been many methods proposed for the segmentation of microarray image. In this paper, a new method utilizing a series of artificial neural networks, which are based on multi-layer perceptron (MLP) and Kohonen networks, is proposed. The proposed method is applied to a set of real-world cDNA images. Quantitative comparisons between the proposed method and commercial software GenePix (R) are carried out in terms of the peak signal-to-noise ratio (PSNR). This method is shown to not only deliver results comparable and even superior to existing techniques but also have a faster run time. (C) 2013 Elsevier Ireland Ltd. All rights reserved.

Keyword:

Adaptive segmentation Artificial neural networks Kohonen neural networks Microarray image

Community:

  • [ 1 ] [Wang, Zidong]Brunel Univ, Dept Informat Syst & Comp, Uxbridge UB8 3PH, Middx, England
  • [ 2 ] [Zineddin, Bachar]Brunel Univ, Dept Informat Syst & Comp, Uxbridge UB8 3PH, Middx, England
  • [ 3 ] [Liu, Xiaohui]Brunel Univ, Dept Informat Syst & Comp, Uxbridge UB8 3PH, Middx, England
  • [ 4 ] [Liang, Jinling]Southeast Univ, Dept Math, Nanjing 210096, Jiangsu, Peoples R China
  • [ 5 ] [Zeng, Nianyin]Fuzhou Univ, Coll Elect Engn & Automat, Fuzhou 350002, Peoples R China
  • [ 6 ] [Li, Yurong]Fuzhou Univ, Coll Elect Engn & Automat, Fuzhou 350002, Peoples R China
  • [ 7 ] [Du, Min]Fuzhou Univ, Coll Elect Engn & Automat, Fuzhou 350002, Peoples R China
  • [ 8 ] [Cao, Jie]Nanjing Univ Sci & Technol, Sch Comp Sci & Technol, Nanjing 210094, Jiangsu, Peoples R China

Reprint 's Address:

  • [Wang, Zidong]Brunel Univ, Dept Informat Syst & Comp, Uxbridge UB8 3PH, Middx, England

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Source :

COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

ISSN: 0169-2607

Year: 2013

Issue: 1

Volume: 111

Page: 189-198

1 . 0 9 3

JCR@2013

4 . 9 0 0

JCR@2023

ESI Discipline: COMPUTER SCIENCE;

JCR Journal Grade:2

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count: 17

SCOPUS Cited Count: 24

30 Days PV: 0

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