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author:

Zhao, Jingjing (Zhao, Jingjing.) [1] | Li, Qiaojuan (Li, Qiaojuan.) [2] | Hu, Jia (Hu, Jia.) [3] | Yu, Hongwu (Yu, Hongwu.) [4] | Shen, Youmin (Shen, Youmin.) [5] | Lai, Hongyan (Lai, Hongyan.) [6] | Li, Qin (Li, Qin.) [7] | Zhang, Hena (Zhang, Hena.) [8] | Li, Yan (Li, Yan.) [9] | Fang, Zhuting (Fang, Zhuting.) [10] | Huang, Shenglin (Huang, Shenglin.) [11]

Indexed by:

Scopus SCIE

Abstract:

BackgroundCircular RNAs (circRNAs) have emerged as a prominent class of covalently closed single-stranded RNA molecules that exhibit tissue-specific expression and potential as biomarkers in extracellular vesicles (EVs) derived from liquid biopsies. Still, their characteristics and applications in EVs remain to be unveiled.MethodsWe performed a comprehensive analysis of EV-derived circRNAs (EV-circRNAs) using transcriptomics data obtained from 1082 human body fluids, including plasma, urine, cerebrospinal fluid (CSF), and bile. Our validation strategy utilized RT-qPCR and RNA immunoprecipitation assays, complemented by computational techniques for analyzing EV-circRNA features and RNA-binding protein interactions.ResultsWe identified 136,327 EV-circRNAs from various human body fluids. Significantly, a considerable amount of circRNAs with a high back-splicing ratio are highly enriched in EVs compared to linear RNAs. Additionally, we discovered brain-specific circRNAs enriched in plasma EVs and cancer-associated EV-circRNAs linked to clinical outcomes. Moreover, we demonstrated that EV-circRNAs have the potential to serve as biomarkers for evaluating immunotherapy efficacy in non-small cell lung cancer (NSCLC). Importantly, we identified the involvement of RBPs, particularly YBX1, in the sorting mechanism of circRNAs into EVs.ConclusionsThis study unveils the extensive repertoire of EV-circRNAs across human biofluids, offering insights into their potential as disease biomarkers and their mechanistic roles within EVs. The identification of specific circRNAs and the elucidation of RBP-mediated sorting mechanisms open new avenues for the clinical application of EV-circRNAs in disease diagnostics and therapeutics.

Keyword:

Biomarker Cancer Circular RNAs Extracellular vesicles RNA-binding proteins

Community:

  • [ 1 ] [Zhao, Jingjing]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 2 ] [Li, Qiaojuan]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 3 ] [Hu, Jia]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 4 ] [Yu, Hongwu]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 5 ] [Shen, Youmin]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 6 ] [Lai, Hongyan]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 7 ] [Li, Qin]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 8 ] [Zhang, Hena]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 9 ] [Li, Yan]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 10 ] [Huang, Shenglin]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China
  • [ 11 ] [Zhao, Jingjing]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 12 ] [Li, Qiaojuan]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 13 ] [Hu, Jia]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 14 ] [Yu, Hongwu]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 15 ] [Shen, Youmin]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 16 ] [Lai, Hongyan]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 17 ] [Li, Qin]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 18 ] [Zhang, Hena]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 19 ] [Li, Yan]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 20 ] [Huang, Shenglin]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China
  • [ 21 ] [Zhao, Jingjing]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 22 ] [Li, Qiaojuan]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 23 ] [Hu, Jia]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 24 ] [Yu, Hongwu]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 25 ] [Shen, Youmin]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 26 ] [Lai, Hongyan]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 27 ] [Li, Qin]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 28 ] [Zhang, Hena]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 29 ] [Li, Yan]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 30 ] [Huang, Shenglin]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China
  • [ 31 ] [Fang, Zhuting]Fujian Med Univ, Fudan Univ, Fujian Canc Hosp, Clin Oncol Sch,Fujian Branch,Shanghai Canc Ctr,Dep, Fuzhou 350014, Peoples R China
  • [ 32 ] [Fang, Zhuting]Fuzhou Univ, Fujian Med Univ, Fujian Prov Hosp, Affiliated Prov Hosp,Shengli Clin Med Coll,Dept In, Fuzhou 350001, Peoples R China

Reprint 's Address:

  • [Huang, Shenglin]Fudan Univ, Shanghai Canc Ctr, Dept Integrat Oncol, Shanghai 200032, Peoples R China;;[Huang, Shenglin]Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Shanghai 200032, Peoples R China;;[Huang, Shenglin]Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai, Peoples R China;;[Fang, Zhuting]Fujian Med Univ, Fudan Univ, Fujian Canc Hosp, Clin Oncol Sch,Fujian Branch,Shanghai Canc Ctr,Dep, Fuzhou 350014, Peoples R China;;[Fang, Zhuting]Fuzhou Univ, Fujian Med Univ, Fujian Prov Hosp, Affiliated Prov Hosp,Shengli Clin Med Coll,Dept In, Fuzhou 350001, Peoples R China;;

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Source :

GENOME MEDICINE

ISSN: 1756-994X

Year: 2024

Issue: 1

Volume: 16

1 0 . 4 0 0

JCR@2023

Cited Count:

WoS CC Cited Count: 1

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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