• Complex
  • Title
  • Keyword
  • Abstract
  • Scholars
  • Journal
  • ISSN
  • Conference
成果搜索

author:

Chen, Yahong (Chen, Yahong.) [1] | Wang, Qiaowen (Wang, Qiaowen.) [2] | Lin, Shujin (Lin, Shujin.) [3] | Lai, Jinglan (Lai, Jinglan.) [4] | Lin, Jing (Lin, Jing.) [5] | Ao, Wen (Ao, Wen.) [6] | Han, Xiao (Han, Xiao.) [7] (Scholars:韩霄) | Ye, Hanhui (Ye, Hanhui.) [8]

Indexed by:

SCIE

Abstract:

Biomarkers are critical for rapid diagnosis of tuberculosis (TB) and could benefit patients with AIDS where diagnosis of TB co-infection is challenging. Meta-analysis is an approach to combine the results of the studies with standard statistical method by weighting each study with different sample size. This study aimed to use meta-analysis to integrate transcriptome datasets from different studies and screen for TB biomarkers in patients who were HIV-positive. Five datasets were subjected to meta-analysis on whole-blood transcriptomes from 640 patients infected with HIV. A total of 293 differentially expressed genes (DEGs) were identified as significant (P<0.0001) using the random effective model to integrate the statistical results from each study. DEGs were enriched in biological processes related to TB, such as "Type I interferon signaling" and "stimulatory C-type lectin receptor signaling". Eighteen DEGs had at least a two-fold change in expression between patients infected with HIV who were TB-positive and those who were TB-negative. GBP4, SERPING1, ATF3 and CDKBN3 were selected as a biomarker panel to perform multivariable logistic regression analysis on TB status and relative gene expression levels. The biomarker panel showed excellent accuracy (AUC>0.90 for HIV+TB) in clinical trial and suggests that meta-analysis is an efficient method to integrate transcriptome datasets from different studies.

Keyword:

human immunodeficiency virus meta-analysis microarray transcriptome tuberculosis

Community:

  • [ 1 ] [Chen, Yahong]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 2 ] [Wang, Qiaowen]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 3 ] [Lin, Shujin]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 4 ] [Lai, Jinglan]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 5 ] [Lin, Jing]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 6 ] [Ao, Wen]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 7 ] [Ye, Hanhui]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China
  • [ 8 ] [Han, Xiao]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou, Peoples R China

Reprint 's Address:

  • 韩霄

    [Ye, Hanhui]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou, Peoples R China;;[Han, Xiao]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou, Peoples R China

Show more details

Related Keywords:

Source :

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY

ISSN: 2235-2988

Year: 2021

Volume: 11

6 . 0 7 3

JCR@2021

4 . 6 0 0

JCR@2023

ESI Discipline: MICROBIOLOGY;

ESI HC Threshold:106

JCR Journal Grade:1

CAS Journal Grade:3

Cited Count:

WoS CC Cited Count: 8

SCOPUS Cited Count: 9

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

Online/Total:73/10035581
Address:FZU Library(No.2 Xuyuan Road, Fuzhou, Fujian, PRC Post Code:350116) Contact Us:0591-22865326
Copyright:FZU Library Technical Support:Beijing Aegean Software Co., Ltd. 闽ICP备05005463号-1