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author:

Wang, Xiaodong (Wang, Xiaodong.) [1] | Wang, Lei (Wang, Lei.) [2] | Wu, Yingjie (Wu, Yingjie.) [3]

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EI Scopus

Abstract:

This paper studies the longest pattern subsequence problem based on the dynamic programming algorithm. An O(n2 ) time algorithm for the problem is firstly presented. Then the presented algorithm is improved further by generalizing the RSK algorithm and the standard Young tableau. When |σ|= 1, the time required by the algorithm is improved to O(n log k) . When |σ|= 2 , the time required by the algorithm is improved to O(n) , an optimal algorithm.

Keyword:

Bioinformatics Dynamic programming

Community:

  • [ 1 ] [Wang, Xiaodong]Department of Computer Science, Fuzhou University, Fuzhou, China
  • [ 2 ] [Wang, Xiaodong]Department of Computer Science, Quanzhou Normal University, Quanzhou, China
  • [ 3 ] [Wang, Lei]College of Computing, Georgia Institute of Technology, Atlanta, GA 30332, United States
  • [ 4 ] [Wu, Yingjie]Department of Computer Science, Fuzhou University, Fuzhou, China

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Year: 2008

Page: 9-14

Language: English

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ESI Highly Cited Papers on the List: 0 Unfold All

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30 Days PV: 0

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