Government　ecological　audit　has　a　major　influence　on　our　sustainable　economic　and　social　development.　The　comprehensive　evaluation　of　government　ecological　audit　becomes　increasingly　important　as　the　deterioration　of　ecological　environment.　Thus,　it　is　great　significance　to　set　up　scientific　evaluation　system　of　government　ecological　audit.　Firstly,　a　present　condition　of　government　ecological　audit　is　discussed,　and　a　computational　process　is　used　to　make　the　evaluation　system　more　integrated.　Secondly,　a　practical　evaluation　system　of　government　ecological　audit　is　presented　to　establish　the　model　in　comprehensive　evaluating　process.　Then,　an　evaluation　example　of　government　ecological　audit　is　proposed　by　using　computational　intelligence　algorithms　of　analytical　hierarchy　process　(AHP).　Finally,　some　policy　recommendations　are　made　to　strengthen　the　establishment　of　evaluation　system　for　government　ecological　construction　performance　audit　in　this　paper.　©　Published　under　licence　by　IOP　Publishing　Ltd.