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author:

Xu, Haipo (Xu, Haipo.) [1] | Zhang, Xiaolong (Zhang, Xiaolong.) [2] | Cai, Zhixiong (Cai, Zhixiong.) [3] | Dong, Xiuqing (Dong, Xiuqing.) [4] | Chen, Geng (Chen, Geng.) [5] | Li, Zhenli (Li, Zhenli.) [6] | Qiu, Liman (Qiu, Liman.) [7] | He, Lei (He, Lei.) [8] | Liang, Bin (Liang, Bin.) [9] | Liu, Xiaolong (Liu, Xiaolong.) [10] | Liu, Jingfeng (Liu, Jingfeng.) [11]

Indexed by:

Scopus SCIE

Abstract:

Tuberculosis is one of the most serious infectious diseases, resulting in death worldwide. Traditional detection methods are not enough to meet the clinical requirements of rapid diagnosis, high specificity, and high sensitivity. Fast, sensitive, and accurate detection of Mycobacterium tuberculosis (MTB) is urgently needed to treat and control tuberculosis disease. Clustered regularly interspaced short palindromic repeats (CRISPR)-associated proteins (Cas12a) exhibit strong nonspecific degradation ability of exogenous single-strand nucleic acids (trans cleavage) after specific recognition of target sequence. We purified Cas12a protein and selected a proper guide RNA based on conserved sequences of MTB from designed guide RNA library. Then, we proposed a novel detection method based on recombinase polymerase amplification and CRISPR/Cas12a nuclease system for specific and sensitive detection of MTB DNA. The assay, based on fluorescence detection, showed 4.48 fmol/L of limit of detection and good linear correlation of concentration with fluorescence value (R-2 = 0.9775). It also showed good performance in distinguishing other bacteria. Furthermore, its clinical performance was evaluated by 193 samples and showed sensitivity of 99.29% (139/140) and specificity of 100% (53/53) at 99% CI, compared with culture method. Taken together, the CRISPR/Cas12a system showed good specificity, excellent sensitivity, and excellent accuracy for MTB detection, and it meets requirements of MTB detection in clinical samples and has great potential for clinical translation.

Keyword:

Community:

  • [ 1 ] [Xu, Haipo]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 2 ] [Zhang, Xiaolong]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 3 ] [Cai, Zhixiong]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 4 ] [Dong, Xiuqing]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 5 ] [Chen, Geng]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 6 ] [Li, Zhenli]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 7 ] [Qiu, Liman]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 8 ] [Liu, Xiaolong]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 9 ] [Liu, Jingfeng]Fujian Med Univ, Mengchao Hepatobiliary Hosp, United Innovat Mengchao Hepatobiliary Technol Key, Fuzhou, Peoples R China
  • [ 10 ] [Xu, Haipo]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 11 ] [Zhang, Xiaolong]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 12 ] [Cai, Zhixiong]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 13 ] [Dong, Xiuqing]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 14 ] [Chen, Geng]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 15 ] [Li, Zhenli]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 16 ] [Qiu, Liman]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 17 ] [Liu, Xiaolong]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 18 ] [Liu, Jingfeng]Fuzhou Univ, Mengchao Med X Ctr, Fuzhou, Peoples R China
  • [ 19 ] [He, Lei]Fuzhou Univ, Coll Biol Sci & Engn, Fuzhou, Peoples R China
  • [ 20 ] [Cai, Zhixiong]Xi An Jiao Tong Univ, Sch Life Sci & Technol, Xian, Peoples R China
  • [ 21 ] [Chen, Geng]Xi An Jiao Tong Univ, Sch Life Sci & Technol, Xian, Peoples R China
  • [ 22 ] [Liu, Xiaolong]Xi An Jiao Tong Univ, Sch Life Sci & Technol, Xian, Peoples R China
  • [ 23 ] [Liu, Jingfeng]Fujian Med Univ, Affiliated Hosp 1, Liver Dis Ctr, Fuzhou, Peoples R China
  • [ 24 ] [Liang, Bin]Fujian Med Univ, Affiliated Hosp, Fujian Matern & Child Hlth Hosp, Fuzhou, Peoples R China

Reprint 's Address:

  • 刘小龙 刘景丰

    [Liu, Xiaolong]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China;;[Liu, Jingfeng]Fujian Med Univ, Mengchao Hepatobiliary Hosp, Fuzhou 350025, Peoples R China

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Source :

JOURNAL OF MOLECULAR DIAGNOSTICS

ISSN: 1525-1578

Year: 2020

Issue: 8

Volume: 22

Page: 1020-1029

5 . 5 6 8

JCR@2020

3 . 4 0 0

JCR@2023

ESI Discipline: CLINICAL MEDICINE;

ESI HC Threshold:142

JCR Journal Grade:1

CAS Journal Grade:2

Cited Count:

WoS CC Cited Count: 34

SCOPUS Cited Count: 25

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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